Information Content

Content Amount
Annotation72
Sequence71
Expression41
Target gene38
Gene37
Structure33
Disease27
Tissue23
Alignment20
Target13
Gene Ontology12
Interaction12
Localization11
SNP10
Protein10
microRNAs9
Binding site9
Conservation9
Pathway9
Network8
Phylogeny8
Motif8
Transcription Factor8
Cluster7
Cell type7
Repeat7
Cancer6
Polymorphism6
Prediction tools6
Structural Elements6
Predicted secondary structure6
Condition6
Orthologs6
Expression profiles5
Evidence5
Next-generation data5
Classification5
mRNA5
Class5
Pattern5
Sense/Antisense5
Cell line5
Sample4
Target RNA4
Biological Process4
Base pair4
Species specific4
Transcripts4
Function4
Silencing process4
Homology4
Regulatory network4
Tumor4
Literature4
Free energy4
Taxonomy4
Imprinted4
Experimental Evidence3
High-throughput sequencing3
Next-generation sequencing3
Long RNA3
Phenotype3
Folding3
Promoter3
Components3
Stage3
Mutation3
Reads3
Database3
Organ3
Target site3
Evolution3
Stress3
Models3
Text mining3
3'UTR Regions2
Nonconventional binding sites2
pri-miRNA expression2
Mammalian2
Viral2
Computational2
Genome locus2
Natural Antisense transcript2
Plant2
RefSeq2
Arabidopsis thaliana2
Molecular Function2
QTL2
Transcription Start Site2
Animal2
Design tool2
Model organisms2
miRNA targets2
Crystallography2
Ideogram2
miRNA expressions profiles2
Ontology2
Target miRNA2
Bacterial2
Platform2
Pipeline2
Transcription Factor Binding Site2
Silencing machinary2
Programmed necrosis2
Secondary Structure2
microRNA–cancer association2
Processes2
Probe2
Conserved Non-coding Elements2
EST2
Autophagy2
Locus2
Drugs2
Transposable Elements2
Apoptosis2
small RNA Library2
Modification sites2
qPCR2
Similarity2
Folding Energy2
programmed cell death2
Targets1
Crops1
Host Gene1
ORF1
Process Function1
RNA binding proteins1
Copy Number Variation1
Metal ion1
Residue1
Target experimental1
Benchmark1
Conservation sites1
Guide strand of miRNA1
predicted peptides1
related disease1
Epigenetic1
Nervous cells1
Regulators1
Strand bias1
Variants1
Autism1
Embryonic1
GeneChip1
Loci1
U12-type intron1
Cleavage sites1
Downstream region1
literature references1
mRNA knockdown1
SNPs1
Antisense transcript1
Cis/Trans1
Disease-associated SNPs1
KEGG1
Pharmaco-miR1
Size classes1
Chloroplast1
Diagram1
Fragile site1
Intronic1
Models plants1
Patient1
Pseudoknot1
Transcription1
Anatomical Structure1
Cereal1
Intergenic region1
Paring1
Protein coding potential1
Sequence and Structure1
Tomato1
Algorithm1
Families of RNA1
Imprinted transcripts1
Other variant1
Self-regulation1
TERT1
Adenocarcinoma1
Catalysis1
Extracellular Circulating MicroRNAs1
Orientation1
Processing Proteins1
RNA Name1
Target transcript1
Biomarkers1
Covariance Model1
Microbial genomes1
Probe Fields1
Reverse transcriptase1
Copy Number Alteration1
Experimental Condition1
Heart development1
Metabolite1
Non-Canonical base pair1
Wiki1
Base Triples1
Eukaryota1
Genus1
Lung1
Post-transcriptional network1
Vertebrates1
Environmental factors1
Genetic variation1
Locus conservation1
ncRNAs from Prediction data1
Regulation Type1
Upstream region1
Associated Conservation1
CLIP-Seq1
Efficacy1
Spatiotemporal distribution1
Arabidopsis1
Dosage compensation1
Functional analysis1
PhastCons1
Transcriptional Regulators1
Antagomir1
Cis-regulatory elements1
Isosteres1
Modifications1
Perturbation1
qPCR data1
Single nucleotide polymorphisms1
Angle1
Chemicals1
Developmentalregulators1
Folding Parameters1
Intron type1
Models (3D Model)1
Protein knockdown1
transcript size1
All kingdom1
Cellular Process1
Degradome-Seq1
Fee-Forward regulatory loops1
Interactions and Processing1
Model1
Paralogs1
Age1
Cell location1
Families data1
Imprinted Control Regions1
miRNA pharmacogenomics set1
Other RNAs1
Acceptor/Donor site1
Cardiovascular system1
Crystal data1
human cancers1
RNA in situ hybridization1
Biological signal1
Correlation1
Experimental Validate Targets1
Histograms1
Metazoan genomes1
OMIM Disorders target1
Resolution1
Bifunctional1
HapMap samples1
Mammalian microRNA1
Nomenclature of miRNA1
related literature1
SVM Classification1
Web server1
Base Quadruples1
Genomic Imprinted1
Longevity1
Posnatal1
Regulatory information1
Variations and Conservation and Epigenetic Modifications1
Comparative analysis1
Embryos (zebrafish)1
General Information1
ncRNA classification1
Plant microRNAs1
Regulation1
Squamous cell carcinoma1
Ultraconserved elements1
Argonaute sites1
Clinical studies1
Gene ID1
lncRNA targets1
Multivariate analysis1
Source1
Domain1
function annotations1
Ligand1
pharmacogenomics1
Quantitative trait locus1
Transcriptional network1
chromosomal location1
Dicer processing site1
Fragments of structure1
Introns fragments1
Anatomy Information1
Chain1
developmental stages1
Intragenic1
Pathogen1
Protein Domains1
Sex specific1
transcript ID1
Cellular Component1
Deep sequence data1
Family1
Mitochondrial1
Promoter Regions1
Adult1
Cumulative distribution 1
Eye1
miRNA families1
databases microRNA–cancer0
external links0
Others0


RNA Classes

RNA Amount
miRNA73
Multiple classes15
Structure11
small RNA10
Long RNA8
snoRNA8
siRNA6
NAT4
CNE3
Ribozyme3
TERC1
piRNA1
SRP RNA1


Information Source

Source Amount
In silico annotation134
Experimental88
Literature55
Manual curation35


Search Method

Method Amount
Keyword118
TAG101
Tabular49
Similarity41
Genomic Location20
Density of ncRNAs6

* Amount = Amount of Databases
Oct. 2014: Release 2.0 - READ ME and Download NRDR 2.0 - (version history)