Database Name

Amount of Organisms

Address database website

ANGIOGENESHomo sapiens, Mus musculus, Danio rerio.http://angiogenes.uni-frankfur...
AntagomirbaseUnspecified.http://bioinfopresidencycolleg...
antiCODEHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster.http://bioinfo.ibp.ac.cn/ANTIC...
ARNUnspecified.http://210.27.80.93/arn/
AthaMapArabidopsis Thaliana.http://www.athamap.de/
AtmiRNETArabidopsis Thaliana.http://atmirnet.itps.ncku.edu....
BmncRNAdbBombyx mori.http://gene.cqu.edu.cn/BmncRNA...
BRAliBaseSaccharomyces cerevisiae, Escherichia coli.http://projects.binf.ku.dk/pga...
CANTATAdbArabidopsis Thaliana, Brassica rapa, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera and 37 others.http://yeti.amu.edu.pl/CANTATA...
ceRDBHomo sapiens.http://www.oncomir.umn.edu/cef...
CircNetHomo sapiens.http://circnet.mbc.nctu.edu.tw
CircuitsDBHomo sapiens, Mus musculus.http://biocluster.di.unito.it/...
CoGemiRHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 32 others.http://cogemir.tigem.it/
ComiRNetHomo sapiens.http://comirnet.di.uniba.it:80...
comTARArabidopsis Thaliana, Oryza sativa, Popolus.http://rnabiology.ibr-conicet....
CondorHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes.http://condor.nimr.mrc.ac.uk/
CRWRattus norvegicus, Canis familiaris, Arabidopsis Thaliana, Dictyostelium discoideum, Glycine Max, Neurospora crassa and 1803 others.http://www.rna.ccbb.utexas.edu...
CSmiRTarHomo sapiens, Mus musculus.http://cosbi.ee.ncku.edu.tw/CS...
CSRDBZea mays, Ozyra sativa, Acinetobacter baumannii ACICU, Corynebacterium diphtheriae HC02, Dehalococcoides mccartyi GT, Flavobacterium psychrophilum JIP02/86.http://sundarlab.ucdavis.edu/s...
DASHRHomo sapiens.http://www.lisanwanglab.org/DA...
dbDEMCHomo sapiens.http://159.226.118.44/dbDEMC/
dbSMRHomo sapiens.http://miracle.igib.res.in/pol...
decodeRNAHomo sapiens.http://www.decoderna.org/index...
deepBaseHomo sapiens, Mus musculus, Gallus gallus, Ciona intestinalis, Drosophila melanogaster, Caenorhabditis elegans.http://deepbase.sysu.edu.cn/
DIANA miRPath v.2.0Homo sapiens, Drosophila melanogaster, Caenorhabditis elegans.http://www.microrna.gr/miRPath...
DIANA-LncBaseHomo sapiens, Mus musculus.www.microrna.gr/LncBase
doRiNAHomo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans.http://dorina.mdc-berlin.de
dPOREHomo sapiens.http://apps.sanbi.ac.za/dpore/
EpimiRBaseUnspecified.http://www.epimirbase.eu
ERISdbArabidopsis Thaliana, Glycine Max, Oryza sativa, Chlamydomonas reinhardtii, Physcomitrella patens, Selaginella moellendorffii.http://lemur.amu.edu.pl/share/...
ExcellmiRDBHomo sapiens.http://www.excellmirdb.brfjais...
ExprTargetDBHomo sapiens.http://www.scandb.org/apps/mic...
fRNAdbHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 37068 others.http://www.ncrna.org/frnadb
GermlncRNAHomo sapiens.http://germlncrna.cbiit.cuhk.e...
GISSDPseudomonas stutzeri A1501, Rhizobium etli CIAT 652, Buchnera aphidicola Sg, Chloroflexus sp. Y-400-fl, Streptococcus pyogenes MGAS10750, Leptotrichia sp. oral taxon 212 and 16 others.http://www.rna.whu.edu.cn/giss...
GreeNCArabidopsis Thaliana, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera, Chlamydomonas reinhardtii and 39 others.http://greenc.sciencedesigners...
GtRNAdbHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 4263 others.http://gtrnadb.ucsc.edu/
HMDDHomo sapiens.http://202.38.126.151/hmdd/mir...
HOCTARdbHomo sapiens.http://hoctar.tigem.it/
IGDB.NSCLCHomo sapiens.http://igdb.nsclc.ibms.sinica....
Immune-miRHomo sapiens.http://biominingbu.org/immunem...
Isomir BankHomo sapiens, Mus musculus, Danio rerio, Drosophila melanogaster, Arabidopsis Thaliana, Oryza sativa.http://mcg.ustc.edu.cn/bsc/iso...
IsomirsHomo sapiens, Mus musculus.http://hood.systemsbiology.net...
LeishDBLeishmania braziliensis.http://leishdb.com/
LincSNPHomo sapiens.http://bioinfo.hrbmu.edu.cn/Li...
Lnc2MethHomo sapiens.http://www.bio-bigdata.com/Lnc...
LNCatHomo sapiens.http://biocc.hrbmu.edu.cn/LNCa...
lncATLASHomo sapiens.http://lncatlas.crg.eu
lnCeDBHomo sapiens. http://gyanxet-beta.com/lnced...
LNCeditingHomo sapiens, Mus musculus, Drosophila melanogaster, Macaca mulatta.http://bioinfo.life.hust.edu.c...
LNCipediaHomo sapiens.http://www.lncipedia.org
LNCmapHomo sapiens.http://www.bio-bigdata.com/LNC...
lncRInterHomo sapiens, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans and 9 others.http://bioinfo.life.hust.edu.c...
lncRNAdbHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus and 55 others.http://lncrnadb.com/
lncRNAdiseaseHomo sapiens.http://202.38.126.151/hmdd/htm...
LncRNASNPHomo sapiens, Mus musculus.http://bioinfo.life.hust.edu.c...
lncRNomeHomo sapiens.http://genome.igib.res.in/lncR...
MDTE DBHomo sapiens, Rattus norvegicus, Mus musculus, Gallus gallus, Bos Taurus, Monodelphis domestica.http://bioinf.njnu.edu.cn/MDTE...
mESAdbHomo sapiens, Mus musculus, Danio rerio.http://konulab.fen.bilkent.edu...
Methylation Guide snoRNAArabidopsis Thaliana, Saccharomyces cerevisiae, Sulfolobus solfataricus, Sulfolobus acidocaldarius, Aeropurum pernix, Methanococcus jannaschii.http://lowelab.ucsc.edu/snoRNA...
MicroPCArabidopsis Thaliana, Brassica rapa, Glycine Max, Lycopersicon esculentum, Medicago truncatula, Oryza sativa and 121 others.http://konulab.fen.bilkent.edu...
microPIRHomo sapiens.http://www4a.biotec.or.th/micr...
microRNA.orgHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans.http://www.microrna.org/
microRNAviewerHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 43 others.http://people.csail.mit.edu/ak...
microTranspoGeneHomo sapiens, Mus musculus, Danio rerio, Caenorhabditis elegans.http://transpogene.tau.ac.il/m...
MicroTroutOncorhynchus mykiss.http://www.mennigen-lab.com/mi...
mimiRNAHomo sapiens.http://mimirna.centenary.org.a...
miR-EdiTarHomo sapiens.http://microrna.osumc.edu/mire...
MIR@NT@NHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes.http://mironton.uni.lu/
miRandbUnspecified.http://mirandb.ir
miRandolaHomo sapiens.http://atlas.dmi.unict.it/mira...
miRĂ²Homo sapiens.http://ferrolab.dmi.unict.it/m...
miRBaseHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 151 others.http://www.mirbase.org/
miRCancerHomo sapiens.http://mircancer.ecu.edu/
mirCoXHomo sapiens.http://210.212.254.116/mircox/...
miRDB Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus.http://www.mirdb.org/
mirDIPHomo sapiens, Rattus norvegicus, Mus musculus, Saccharomyces cerevisiae, Kaposi sarcoma-associated herpesvirus, Musca domestica.http://ophid.utoronto.ca/mirDI...
miRecordsHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus.http://mirecords.biolead.org/
miRFANsArabidopsis Thaliana, Oryza sativa, Cassava.http://www.cassava-genome.cn/m...
miRGateHomo sapiens, Rattus norvegicus, Mus musculus.http://mirgate.bioinfo.cnio.es...
miRGatorHomo sapiens.http://mirgator.kobic.re.kr/
mirGenHomo sapiens, Mus musculus.http://www.microrna.gr/mirgen/
miRHrtMus musculus, Danio rerio, Gallus gallus.http://sysbio.suda.edu.cn/mirh...
miRmineHomo sapiens.http://guanlab.ccmb.med.umich....
miRNAVitis vinifera.http://www.itb.cnr.it/ptp/grap...
miRNA Body MapHomo sapiens, Rattus norvegicus, Mus musculus.http://www.mirnabodymap.org
miRNA SNiPerHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus and 11 others.http://www.integratomics-time....
miRnalyzeHomo sapiens.http://www.mirnalyze.in
miRNAMapHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes.http://mirnamap.mbc.nctu.edu.t...
miRNApathHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus.http://lgmb.fmrp.usp.br/mirnap...
miRNASNPUnspecified.http://bioinfo.life.hust.edu.c...
miRNA_TargetsHomo sapiens, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans.http://mamsap.it.deakin.edu.au...
miRNESTUnspecified.http://rhesus.amu.edu.pl/mirne...
miRNeyeMus musculus.http://mirneye.tigem.it/
miROrthoHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 40 others.http://cegg.unige.ch/mirortho/
miRPathDBHomo sapiens, Mus musculus.https://mpd.bioinf.uni-sb.de/o...
miRSelHomo sapiens, Rattus norvegicus, Mus musculus.http://services.bio.ifi.lmu.de...
miRTarBaseHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster and 11 others.http://mirtarbase.mbc.nctu.edu...
miRvarHomo sapiens.http://genome.igib.res.in/mirl...
miRWalkHomo sapiens, Rattus norvegicus, Mus musculus.http://www.ma.uni-heidelberg.d...
miSolRNASolanum lycopersicum.http://www.misolrna.org/
miTALOSHomo sapiens, Mus musculus.http://mips.helmholtz-muenchen...
Mobile Group II IntronsArabidopsis Thaliana, Glycine Max, Neurospora crassa, Saccharomyces cerevisiae, Zea mays, Kluyveromyces lactis and 22 others.http://www.fp.ucalgary.ca/grou...
NAPPDrosophila melanogaster, Culex quinquefasciatus, Brugia malayi, Escherichia coli, Photorhabdus luminescens, Bacillus subtilis and 709 others.http://napp.u-psud.fr/
NATsDBHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus.http://natsdb.cbi.pku.edu.cn/
ncRNAdbHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus, Drosophila melanogaster and 84 others.http://ncrnadb.trna.ibch.pozna...
ncRNAimprintHomo sapiens, Rattus norvegicus, Mus musculus, Macaca mulatta, Bos Taurus, Ovis aries.http://rnaqueen.sysu.edu.cn/nc...
NetAgeHomo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Saccharomyces cerevisiae.http://netage-project.org/
NONCODEHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 908 others.http://www.noncode.org/
NRDTDHomo sapiens.http://chengroup.cumt.edu.cn/N...
NREDHomo sapiens, Mus musculus.http://jsm-research.imb.uq.edu...
OCDBHomo sapiens.http://ocdb.di.univr.it
OncomiRdbBHomo sapiens, Mus musculus.http://tdb.ccmb.res.in/OncomiR...
PatroclesHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus, Bos Taurus.http://www.patrocles.org/
PeTMbaseGlycine Max, Medicago truncatula, Oryza sativa, Populus trichocarpa, Solanum lycopersicum, Brachypodium distachyon.http://petmbase.org
Pharmaco-miRUnspecified.http://www.pharmaco-mir.org/
piRNA cluster databaseHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster.http://www.smallrnagroup.uni-m...
piRNABankHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Drosophila melanogaster, Ornithorhynchus anatinus.http://pirnabank.ibab.ac.in/
Plant snoRNA databaseArabidopsis Thaliana, Glycine Max, Lycopersicon esculentum, Medicago truncatula, Chlamydomonas reinhardtii, Pinus taeda and 12 others.http://bioinf.scri.sari.ac.uk/...
PlantNATsDBArabidopsis Thaliana, Glycine Max, Medicago truncatula, Vitis vinifera, Ectocarpus siliculosus, Chlamydomonas reinhardtii and 63 others.http://bis.zju.edu.cn/pnatdb/
PlncdbArabidopsis Thaliana.http://chualab.rockefeller.edu...
PmiRExAtArabidopsis Thaliana, Oryza sativa, Triticum aestivum, Zea mays.http://pmirexat.nabi.res.in
PmiRKBArabidopsis Thaliana, Oryza sativa.http://bis.zju.edu.cn/pmirkb/
PMRDArabidopsis Thaliana, Brassica rapa, Dictyostelium discoideum, Glycine Max, Medicago truncatula, Oryza sativa and 121 others.http://bioinformatics.cau.edu....
PNRDUnspecified.http://structuralbiology.cau.e...
PolymiRTSHomo sapiens, Mus musculus.http://compbio.uthsc.edu/miRSN...
PseudoBaseHomo sapiens, Mus musculus, Bos Taurus, Saccharomyces cerevisiae, Bombyx mori, Escherichia coli and 121 others.http://pseudobaseplusplus.utep...
PsmirHomo sapiens.http://www.bio-bigdata.com/Psm...
PuTmiRHomo sapiens.http://www.isical.ac.in/~bioin...
RCGDHomo sapiens.http://www.juit.ac.in/attachme...
RepTarHomo sapiens, Mus musculus, Human EBV virus, Human HCMV virus, Human KSHV virus, Mouse MCMV virus.http://bioinformatics.ekmd.huj...
RfamArabidopsis Thaliana, Brassica rapa, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera and 270 others.http://rfam.sanger.ac.uk/
RiceATMOryza sativa.http://syslab3.nchu.edu.tw/ric...
RNA FRABASEUnspecified.http://rnafrabase.ibch.poznan....
RNA STRANDHomo sapiens, Canis familiaris, Mus musculus, Bos Taurus, Oryza sativa, Saccharomyces cerevisiae and 48 others.http://www.rnasoft.ca/strand/
RNAcentralUnspecified.http://rnacentral.org
RNAdbHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Bos Taurus, Pan troglodytes.http://research.imb.uq.edu.au/...
RNAi CodexHomo sapiens, Rattus norvegicus, Mus musculus, Drosophila melanogaster, Arabidopsis Thaliana.http://cancan.cshl.edu/cgi-bin...
RNAJunctionUnspecified.http://rnajunction.abcc.ncifcr...
RNArchitectureUnspecified.http://iimcb.genesilico.pl/RNA...
rVarBaseHomo sapiens.http://rv.psych.ac.cn/index.do
S-MEDHomo sapiens.http://www.oncomir.umn.edu/SME...
siRNAdbHomo sapiens.http://sirna.sbc.su.se/
Sno/scaRNAbaseDanio rerio, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis Thaliana, Bos Taurus and 23 others.http://gene.fudan.sh.cn/snoRNA...
snOPYHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus and 27 others.http://snoopy.med.miyazaki-u.a...
snoRNA-LBME-dbHomo sapiens.http://www-snorna.biotoul.fr/
snoRNP databaseUnspecified.http://www.evolveathome.com/sn...
SomamiRHomo sapiens.http://compbio.uthsc.edu/Somam...
SorghumFDBSorghum bicolor.http://structuralbiology.cau.e...
SRDStaphylococcus haemolyticus JCSC1435, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis ATCC 12228, Staphylococcus aureus RF122, , Staphylococcus lugdunensis HKU09-01 and 22 others.http://srd.genouest.org
sRNAdbUnspecified.http://bioinfo.mikrobio.med.un...
sRNAmapEscherichia coli, Pectobacterium atrosepticum, Photorhabdus luminescens, Salmonella species, Serratia species, Shigella species and 9 others.http://srnamap.mbc.nctu.edu.tw...
SRPDBHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Ciona intestinalis and 539 others.http://rnp.uthscsa.edu/rnp/SRP...
Ssa miRNAs DBSalmo salar.http://www.molgenv.com/ssa_mir...
starBaseHomo sapiens, Mus musculus, Caenorhabditis elegans, Arabidopsis Thaliana, Oryza sativa, Vitis vinifera.http://starbase.sysu.edu.cn/
STarMirDBHomo sapiens, Mus musculus, Caenorhabditis elegans.http://sfold.wadsworth.org/sta...
tasiRNAdbArabidopsis Thaliana, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera, Pinus taeda and 12 others.http://bioinfo.jit.edu.cn/tasi...
Telomerase DatabaseHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 252 others.http://telomerase.asu.edu/
TFCONESHomo sapiens, Mus musculus, Takifugu rubripes.http://tfcones.fugu-sg.org/
The ribonuclease P databaseHomo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Macaca mulatta, Pan troglodytes and 252 others.http://www.mbio.ncsu.edu/rnase...
The Tomato small RNA DatabaseSolanum lycopersicum, Solanum pennellii, Solanum lycopersicum x S. pennellii.http://ted.bti.cornell.edu/
The UCSC Genome Browser databaseHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Macaca mulatta, Bos Taurus and 40 others.http://genome.ucsc.edu/
TMRECHomo sapiens.http://210.46.85.180:8080/TMRE...
tmRNA Website Reclinomonas americana , Phytophthora citricola , Phytophthora capsici , Phytophthora fragariae , Saprolegnia ferax , Herbaspirillum seropedicae SmR1 and 1594 others.http://bioinformatics.sandia.g...
Trans-SAMapHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus.http://trans.cbi.pku.edu.cn/
tRNAdbProchlorococcus marinus, Moloney murine leukemia virus, Bacillus thuringiensis serovar konkukian str. 97-27, Pyrobaculum aerophilum str. IM2, Fusobacterium nucleatum subsp. nucleatum ATCC 25586, Symbiobacterium thermophilum IAM 14863 and 157 others.http://trnadb.bioinf.uni-leipz...
U12DBHomo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 14 others.http://genome.imim.es/datasets...
UCbase & miRfuncHomo sapiens, Rattus norvegicus, Mus musculus.http://microrna.osu.edu/.UCbas...
UCNEbaseUnspecified.http://ccg.vital-it.ch/UCNEbas...
vHoTHomo sapiens, Rattus norvegicus, Mus musculus, Macaca mulatta, Bos Taurus, Viruses.http://best.snu.ac.kr/vhot/
ViTaHomo sapiens, Rattus norvegicus, Mus musculus.http://vita.mbc.nctu.edu.tw/
Yeast snoRNA databaseSaccharomyces cerevisiae.http://people.biochem.umass.ed...
YM500Homo sapiens, Mus musculus.http://ngs.ym.edu.tw/ym500/
Oct. 2014: Release 2.0 - READ ME and Download NRDR 2.0 - (version history)